好的,我现在手动检查所有可能的维度。当堆栈还包含维度小于其余数据的重构数据时,请首先删除这些数据。
这是我检查尺寸的方法:
info = dicominfo(filename);
datorig = dicomread(filename);
%dimension sizes per frame
nrX = double(info.Rows); %similar nX;% info.width;% info.MRAcquisitionFrequencyEncodingSteps;% info.MRAcquisitionPhaseEncodingStepsInPlane
nrY = double(info.Columns); %similar nY;% info.height;% info.NumberOfKSpaceTrajectories;
%dimensions between frames
nrEcho = double(info.MRSeriesNrOfEchoes);
nrDyn = double(info.MRSeriesNrOfDynamicScans);
nrPhase = double(info.MRSeriesNrOfPhases);
nrSlice = double(info.MRSeriesNrOfSlices); %no per frame struct entry, calculate from offset.
%nr of frames
nrFrame = double(info.NumberOfFrames);
nrSeq = 1; % nSeq not sure how to interpret this, wheres the per frame struct entry?
nrBval = double(info.MRSeriesNrOfDiffBValues); % nB
nrGrad = double(info.MRSeriesNrOfDiffGradOrients); % info.MRSeriesNrOfPhaseContrastDirctns;%similar nGrad?
nrASL = 1; % info.MRSeriesNrOfLabelTypes;%per frame struct entry?
imtype = cell(1, nrFrame);
for ii = 1:nrFrame
%imtype(ii) = eval(sprintf('info.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.MRImageTypeMR', ii));
imtype{ii} = num2str(eval(sprintf('info.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.MRImageTypeMR', ii)));
end
imType = unique(imtype, 'stable');
nrType = length(imType);
这就是我重新格式化尺寸的方法:
%% count length of same dimension positions from start
if nrEcho > 1
for ii = 1:nrFrame
imecno(ii) = eval(sprintf('inf.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.EchoNumber', ii));
end
lenEcho = find(imecno ~= imecno(1), 1, 'first') - 1;
else
lenEcho = nrFrame;
end
if nrDyn > 1
for ii = 1:nrFrame
imdynno(ii) = eval(sprintf('inf.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.TemporalPositionIdentifier', ii));
end
lenDyn = find(imdynno ~= imdynno(1), 1, 'first') - 1;
else
lenDyn = nrFrame;
end
if nrPhase > 1
for ii = 1:nrFrame
imphno(ii) = eval(sprintf('inf.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.MRImagePhaseNumber', ii));
end
lenPhase = find(imphno~=imphno(1), 1, 'first') - 1;
else
lenPhase = nrFrame;
end
if nrType > 1
q = 1;
imtyno(1, 1) = q;
for ii = 2:nrFrame
if imtype{:, ii-1} ~= imtype{:, (ii)}
q = q+1;
end
imtyno(1, ii) = q;
%for jj = 1:nrType
%if imtype{:,ii} == imType{:,jj}
% imtyno(1, ii) = jj;
%end
%end
end
if q ~= nrType
nrType = q;
end
lenType = find(imtyno ~= imtyno(1), 1, 'first') - 1;
else
lenType = nrFrame;
end
% slices are not numbered per frame, so get this indirectly from location
% currently not sure if working for all angulations
for ii = 1:nrFrame
imslice(:,ii) = -eval(['inf.PerFrameFunctionalGroupsSequence.Item_',sprintf('%d', ii),'.PlanePositionSequence.Item_1.ImagePositionPatient']);
end
% stdsl = std(imslice,[],2); --> Assumption
% dirsl = max(find(stdsl == max(stdsl)));
imslices = unique(imslice', 'rows')';
if nrSlice > 1
for ii = 1:nrFrame
for jj = 1:nrSlice
if imslice(:,ii) == imslices(:,nrSlice - (jj-1)); %dirsl or :?
imslno(1, ii) = jj;
end
end
end
lenSlice = find(imslno~=imslno(1), 1, 'first')-1;
else
lenSlice = nrFrame;
end
if nrBval > 1
for ii = 1:nrFrame
imbno(ii) = eval(sprintf('inf.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.MRImageDiffBValueNumber', ii));
end
lenBval = find(imbno~=imbno(1), 1, 'first') - 1;
else
lenBval = nrFrame;
end
if nrGrad > 1
for ii = 1:nrFrame
imgradno(ii) = eval(sprintf('inf.PerFrameFunctionalGroupsSequence.Item_%d.PrivatePerFrameSq.Item_1.MRImageGradientOrientationNumber', ii));
end
lenGrad = find(imgradno~=imgradno(1), 1, 'first')-1;
else
lenGrad = inf.NumberOfFrames;
end
lenSeq = nrFrame; % dont know how to get this information per frame, in my case always one
lenASL = nrFrame; % dont know how to get this information per frame, in my case always one
%this would have been the goal format
goaldim = [nrSlice nrEcho nrDyn nrPhase nrType nrSeq nrBval nrGrad nrASL]; % what we want
goallen = [lenSlice lenEcho lenDyn lenPhase lenType lenSeq lenBval lenGrad lenASL]; % what they are
[~, permIX] = sort(goallen);
dicomdim = zeros(1, 9);
for ii = 1:9
dicomdim(1, ii) = goaldim(permIX(ii));
end
dicomdim = [nrX nrY dicomdim];
%for any possible zero dimensions from header use a 1 instead
dicomdim(find(dicomdim == 0)) = 1;
newdat = reshape(dat, dicomdim);
newdim = size(newdat);
newnonzero = length(newdim(3:end));
goalnonzero = permIX(1:newnonzero);
[dummyy, goalIX] = sort(goalnonzero);
goalIX = [1 2 goalIX+2];
newdat = permute(newdat, goalIX);
newdat = reshape(newdat, [nrX nrY goaldim]);
当我将其作为函数使用了较长时间并对其进行了一些调试后,我可能会在 mathworks 的文件交换中发帖。