我是使用 SLURM 训练一批卷积神经网络的新手。为了轻松跟踪所有经过训练的 CNN,我想将 SLURM jobID 作为输入参数传递给 python。将其他变量作为参数传递可以正常工作。但是,我无法访问 SLURM jobid 来通过。
我已经尝试过使用${SLURM_JOBID}
, ${SLURM_JOB_ID}
, %j
and %J
。我还尝试在传递给 python 之前将这些 slurm 环境变量写入变量。
这是我最新的代码:
#!/bin/bash
# --- info to user
echo "script started ... "
# --- setup environment
module purge # clean up
module load python/3.6
module load nvidia/10.0
module load cudnn/10.0-v7
# --- display information
HOST=`hostname`
echo "This script runs the CNN. Slurm scheduled it on node $HOST"
echo "I am interested of all environment variables Slurm adds:"
env | grep -i slurm
# --- start running ...
echo " --- run --- "
# --- define some varibles
dc="dice"
sm="softmax"
# --- run a job using a slurm batch script
for layer in {3..15..2}
do
sbatch -N 1 -n 1 --mem=20G --mail-type=END --gres=gpu:V100:3 --wrap="singularity --noslurm tensorflow_19.03-py3.simg python run_CNN_dynlayer.py ${SLURM_JOBID} ${layer} ${dc}"
sleep 1 # pause 1s to be kind to the scheduler...
echo "jobid: "+${SLURM_JOBID}
echo " --- next --- "
done
cmd 看起来像这样:
femonk@rarp1 [CNN] ./run_CNN_test.slurm
script started ...
This script runs the CNN. Slurm scheduled it on node rarp1
I am interested of all environment variables Slurm adds:
SLURM_ACCOUNT=AI
PYTHONPATH=/cluster/slurm/lib64/python3.6/site-packages:/cluster/slurm/lib64/python3.6/site-packages:/cluster/slurm/lib64/python3.6/site-packages:
--- run ---
Submitted batch job 3182711
jobid:
--- next ---
femonk@rarp1 [CNN]
有谁知道我的代码有什么问题吗?
预先非常感谢。
The SLURM_JOBID
环境变量仅适用于作业进程,不适用于提交作业的进程。作业 ID 从sbatch
命令,所以如果你想把它放在一个变量中,你需要给它赋值。
do
SLURM_JOBID=$(sbatch --parsable -N 1 -n 1 --mem=20G --mail-type=END --gres=gpu:V100:3 --wrap="singularity --noslurm tensorflow_19.03-py3.simg python run_CNN_dynlayer.py ${SLURM_JOBID} ${layer} ${dc}")
sleep 1 # pause 1s to be kind to the scheduler...
echo "jobid: "+${SLURM_JOBID}
echo " --- next --- "
done
注意命令替换的使用$()
与--parsable
的论证sbatch
.
另请注意,该行Submitted batch job 3182711
当前输出的将消失,因为它用于填充SLURM_JOBID
多变的。
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