我有以下与 cp11 相关的错误。
看起来 cp11 编译有错误,我不知道如何解决。
我尝试做的就是卸载该软件包并再次重新安装。
我使用的是 RHEL 7,gcc 版本是 4.8.5
> install.packages("tidyverse")
Installing package into ‘/datascience/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependency ‘tidyr’
trying URL 'https://cran.rstudio.com/src/contrib/tidyr_1.1.1.tar.gz'
Content type 'application/x-gzip' length 879411 bytes (858 KB)
==================================================
downloaded 858 KB
trying URL 'https://cran.rstudio.com/src/contrib/tidyverse_1.3.0.tar.gz'
Content type 'application/x-gzip' length 712837 bytes (696 KB)
==================================================
downloaded 696 KB
* installing *source* package ‘tidyr’ ...
** package ‘tidyr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c cpp11.cpp -o cpp11.o
In file included from /usr/lib64/R/library/cpp11/include/cpp11/as.hpp:8:0,
from /usr/lib64/R/library/cpp11/include/cpp11.hpp:5,
from /usr/lib64/R/library/cpp11/include/cpp11/declarations.hpp:8,
from cpp11.cpp:4:
/usr/lib64/R/library/cpp11/include/cpp11/protect.hpp: In lambda function:
/usr/lib64/R/library/cpp11/include/cpp11/protect.hpp:185:52: error: parameter packs not expanded with ‘...’:
return unwind_protect_sexp([&] { return ptr_(a...); });
^
/usr/lib64/R/library/cpp11/include/cpp11/protect.hpp:185:52: note: ‘a’
/usr/lib64/R/library/cpp11/include/cpp11/protect.hpp:185:53: error: expansion pattern ‘a’ contains no argument packs
return unwind_protect_sexp([&] { return ptr_(a...); });
^
make: *** [cpp11.o] Error 1
ERROR: compilation failed for package ‘tidyr’
* removing ‘/datascience/R/x86_64-redhat-linux-gnu-library/3.6/tidyr’
Warning in install.packages :
installation of package ‘tidyr’ had non-zero exit status
ERROR: dependency ‘tidyr’ is not available for package ‘tidyverse’
* removing ‘/datascience/R/x86_64-redhat-linux-gnu-library/3.6/tidyverse’
Warning in install.packages :
installation of package ‘tidyverse’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmp7JHlRI/downloaded_packages’
较新版本的 gcc 将正确编译 tidyr,如 @Maurits Evers 所述。
#Enable the rhscl repository
yum-config-manager --enable rhel-server-rhscl-7-rpms
#Install devtooset-X
yum install devtoolset-X
#Open a shell with the required environment variables.
scl enable devtoolset-X bash
之后打开 R shell。如果在非交互式脚本中使用,请获取 scl 启用文件,该文件将在当前 shell 中设置环境变量,
source /opt/rh/devtoolset-X/enable
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